open horizons "Levenshtein Distance" Pattern Matching for DNA Sequencing Data

                       Pattern Matching for DNA Sequencing Data

Using Spring Batch and Levenshtein Distance

Author : Wadï Mami

E-mail : wmami@steg.com.tn/ didipostman77@gmail.com

Date : 24/06/2022



DNA is a sequence of letters such as A, C, G, T. Searching for specific sequences is often difficult due to measurement errors, mutations or evolutionary alterations. Thus, similarity of two sequences using Levenshtein Distance is more useful than exact matches.

So instead of Karp Rabin we will use Levenshtein Distance or Jaro_Winkler_Similarity by using 

Package org.apache.commons.text.similarity

So

Spring Batch + Levenshtein Distance or Jaro_Winkler Similarity = How Crispr cas9 Works due to (https://www.tudelft.nl/en/2018/tu-delft/mathematics-explains-why-crispr-cas9-sometimes-cuts-the-wrong-dna)

Here the initial project

https://didipostmanprojects.blogspot.com/2022/06/spring-batch-karp-rabin.html


Nano Robots could be guided by

@springbatch

+ Karp Rabin (or Levenshtein Distance or JaroWinkler Similarity) it is just a suggestion I am not an expert a #nanotechnology #java #developer then you can cure diseses like #cancer #diabetes etc



The Ultimate definitive guide on how Spring batch could may explain how CRISPR Cas9Works read this link  https://didipostmanprojects.blogspot.com/2023/01/the-definitive-explanation-on-how.html

Comments

  1. didipostmanJanuary 23, 2023 at 6:02 AM

    The Ultimate definitive guide on how Spring batch could may explain how CRISPR Cas9Works read this link https://didipostmanprojects.blogspot.com/2023/01/the-definitive-explanation-on-how.html

    ReplyDelete

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